Scaffold JGI25921J50272_10001157

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10001157
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8804
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (25.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F003687	Metagenome / Metatranscriptome	473	Y
F007026	Metagenome	359	Y
F020342	Metagenome / Metatranscriptome	224	Y
F021097	Metagenome	220	Y
F059883	Metagenome	133	N
F074820	Metagenome	119	Y
F091979	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_100011571	F074820	N/A	MTVLAIEHTSFTDTHVTVTAVVDDMRLLYRATRFDPEEWAPALC
JGI25921J50272_1000115713	F059883	N/A	MGALMDQTEDNKRYHLIINVDEKYAIVNALAFYHAHHTMGALMDEDEREQYMLAFQEDGPIFVDSLATKVANTF*
JGI25921J50272_1000115718	F003687	GGAG	MTPKAVEQLLTQDARLLARRDSPAIDQEIEEQRQAALDLFFQWQDGLAQFQDLVPFCVILQHKVDLNRDLLRWERRHED*
JGI25921J50272_1000115719	F021097	N/A	MSNSFKDSCVALVIGIGSGLLLSTGVQKLLNQHYEEHCNARPNHNLVRTQGLLGDTYYCIHSKYL*
JGI25921J50272_100011572	F020342	N/A	MSAYVDYLNMFDRINLAACAKRRATDNLLDSTRWEGEYDTARLWMKYRLIKTTTYSYIDED*
JGI25921J50272_100011574	F001120	GGAGG	VTKKSHISFDRTIHGVNITEHGIKSVSKQIKLGPFQLTVNANPNGVKGSVSIPGTGLSIPNIKLF*
JGI25921J50272_100011575	F001165	N/A	MTSSNTPRIPDSLDMQRLQAMQFVAKMKESAERHGIGFIGGFIAPNGEKFVMTNMDDDDAMALMPEDLK*
JGI25921J50272_100011576	F007026	N/A	MEQTKKYPELTWTKNEYHQLQLALDALKNIRNREDRRHQMDEHLDPHTRDVLDEVIGMLSDELDYDPTPSEPGEPPMTMDEMHTAAWKEHLAMHS*
JGI25921J50272_100011578	F091979	AGG	MRSEFVLMLIAGRYAVGGSPFLEGWKQEYMKAQGSMPPLEKVMDFLTSVIRNESIPIQNKQAEIRMLDQMRRFVPEVRSVVG*