Scaffold JGI25921J50272_10000083

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10000083
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28487
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (43.40%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F007026	Metagenome	359	Y
F021097	Metagenome	220	Y
F029735	Metagenome	187	Y
F034160	Metagenome / Metatranscriptome	175	Y
F055679	Metagenome / Metatranscriptome	138	Y
F059883	Metagenome	133	N
F095396	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_1000008311	F059883	N/A	MGALMDQTEDNKRYHLIINVDEKYAIVNALAFYHAHHTLGALMDEDEREQYMLAFQEDGPTFVDQLATKIANTF*
JGI25921J50272_1000008316	F021097	N/A	MQRNYFSDACVALILGTGLGLLASVGVQKVLNRHYQATCHDRPGHNLIYVQGFLGDTYYCINSKYMN*
JGI25921J50272_1000008321	F055679	GGAG	VIDLTTGWVPHPGVPGGFHLVYIDSLVGEISIVTGPKGSGLMAANDPGSETTYEAWFPGMCDPIGYLTLAELQGIIKFMRQREQEHLAWQDED*
JGI25921J50272_1000008324	F095396	GGA	MNPKNRAERVVALDAITEEAEKLAASGADPLTLKSFTIGARKELADQRPDVENYFDAAVAAKKAKNSF*
JGI25921J50272_1000008326	F034160	GGA	MEMKEGAFTAKAKRKGITTAQLQENVLSNPDEYDEKTVKQARLRQTLVGLKKRKDKK*
JGI25921J50272_1000008327	F029735	N/A	MAKDHRLALDRYIDFTKDPFLVKRKVDFDDSFSSKPSTGKAPWMPSRFTEDDLLRRVQTRKLQLNPGLNFVGDSPEEYEVFANIGRFTRKEGYNFEEGRPNTALRPEDQPGFSPIWVEAYRISPTVKPEKRASNPMPRVNNPDPKGYMMAAAEQRALKEAEGDKSVAQLISTKPEDKTEVFKRNNEEPTKNKEEIKKA*
JGI25921J50272_100000834	F001120	GGAGG	VTKKSPISFDRTIHGVNITEHGIKSVSKQIKLGPFQLTVNASPNGVKGSVSIPGTGLSIPGIKLL*
JGI25921J50272_100000835	F001165	N/A	MTNPNTPRIPDSIDIQRLQAMQLVAKMKESAEKHGIGFIGGFISPDGQKFVMTNMDDDDAMALMPEDLK*
JGI25921J50272_100000836	F007026	N/A	MAYPEINWTKNEYKQLEQALDILKAVIERESKRHQMDEHLVPGDNDIVQEAIGLLEEIIDYDPTPNESGEPPMTMNEMHSAAWKEHQEMHR*