Scaffold JGI25921J50272_10000046

Overview

Basic Information

• Taxon OID: 3300003430
• Scaffold ID: JGI25921J50272_10000046
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34848
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (52.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F017818	Metagenome / Metatranscriptome	238	Y
F085168	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25921J50272_1000004649	F001881	AGGA	MTERAQNFMNAVWELRKNGADTEPKLVAAILTLVAENTKFYTAQEGLIVLDKNDILELSKELVSLNE*
JGI25921J50272_1000004651	F085168	AGG	MIRKIRILLWQIVSDLEQRLYPFENENHDDYYYTVKNDETGEKYMIIEWIKSFDERIIRLQDEMIYVKNELRHVKKDD*
JGI25921J50272_1000004657	F017818	N/A	MNKDEYYDWIDENDTYPKHSHKWIVGLYTPDGGRFDMLHRYFGPFDTREEAKVFAADYKDKYTKPGFISKTKIFPLCEVVK*