NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26084J50262_1025216

Scaffold JGI26084J50262_1025216


Overview

Basic Information
Taxon OID3300003427 Open in IMG/M
Scaffold IDJGI26084J50262_1025216 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1768
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031255Metagenome / Metatranscriptome183N
F035552Metagenome172N
F050369Metagenome / Metatranscriptome145N
F077286Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
JGI26084J50262_10252161F050369N/AMKITEKDLRNWFPRDMRFLHFCAKYYGYSFHNDEVVERANHLAVLNVMRLVNRDQEFEDEAHMTGIVMSSFRYAILNAYSNSLSANEKNLEVRNESELTYGVGDEEYSKYQASAVADTKEIDNLVDFVTEYAETNLPYLQRRALVECVIGESTMKELATDTDTSVRKVHLAKQKAIRRVKKLIGALNENEKKYGKEETNGKYISPSRSKLQIAIQLEPIRRDETRERDYSKAMSFVNTPPKV*
JGI26084J50262_10252162F035552N/AMSIKDDLLISADINNLYWVIGELAKKAKEDNDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLKYDGTVEALNLKTKLLSQIMNEKMDEDVNNQF*
JGI26084J50262_10252163F077286GAGMSKYKYTVEWEGELTNYKQDFETIEEARIAMIMHHKRNAVIHVIKIDEY*
JGI26084J50262_10252164F031255N/AAELQSKGTIFGAEYRKKNGEVTKINGRFGVSKFVKGTGTSNPNVLTVWDNNRKRYTSLIPDNIVRITTNKRRYLKTDEFLIENYE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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