NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25830J50189_105636

Scaffold JGI25830J50189_105636


Overview

Basic Information
Taxon OID3300003417 Open in IMG/M
Scaffold IDJGI25830J50189_105636 Open in IMG/M
Source Dataset NameUpper troposphere microbial communities from California, USA - DAQCA-003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)811
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039839Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
JGI25830J50189_1056361F039839AGGAMIALTRGENLARRIIPVSSRPALRRETRFGLPLTPESGGPSRHRAAQFARAMSRARRRQE
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