Scaffold JGI25922J50271_10067494

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10067494
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 780
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F007644	Metagenome / Metatranscriptome	347	Y
F036237	Metagenome / Metatranscriptome	170	Y
F049617	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100674941	F049617	AGG	MDMTMEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELS
JGI25922J50271_100674942	F007644	GGAG	MTKSSQFMEYMKLHLISLEQDLEMNPESINVIDIPGQIHATRHLLSVATDIMNSTNERYE
JGI25922J50271_100674943	F001460	AGGAGG	MLGYTAEDLDRMTNAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFD*
JGI25922J50271_100674944	F036237	N/A	DWVNSNLDEGQLYADWCVADMSNSNYLKGRFNQFYDLGPTDTYYLQWDEEA*