Scaffold JGI25922J50271_10052527

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10052527
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 913
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F018713	Metagenome	233	N
F024743	Metagenome / Metatranscriptome	204	N
F047570	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100525271	F018713	N/A	MNPDPNLWREIPQEVKDAALLLGNYFKKQGLDSWTLYDVSSRQNFNGAYNQGLDTAISLVSEGSDMETIICGLENSKK*
JGI25922J50271_100525272	F024743	N/A	MDVVALSNLYSHASGAYNKAKDAQDLIIMMNVLHLRLEHNMAYHKIAKRCGIKVNKVKLXLFNYESRP*
JGI25922J50271_100525273	F047570	N/A	MTDENKLKIVTLSHNIKALCYILDKKVFSVYCVTSGTFTEIDSLFELVKELKEMNKEE*
JGI25922J50271_100525274	F004723	N/A	MNKGDKFIHTDIVGRKYEVTYTGTRRVVKDCEFEFFVDDKGDSCFFTDTEVKKMEKKD*