Scaffold JGI25922J50271_10036440

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10036440
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1153
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F004666	Metagenome / Metatranscriptome	428	Y
F024786	Metagenome / Metatranscriptome	204	Y
F069753	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100364401	F069753	AGGCGG	MKTKEQQVAELLCNYSEDHFFNPASLGGFLADQPTYTLDRIMEVVTWVIEKQARRYEREVENGGLVSEGLALAYKLDQVVDKIKDKNTFNN
JGI25922J50271_100364402	F004666	AGGA	MTTKREYLASKGITVGRRGRFSSAANKALQDAAAQGVVFQAEKPQPKK*
JGI25922J50271_100364403	F024786	GGAG	LPVYRVFGTKYTNYYTIIEAADQFEAVDLANALPEIEWNSIPTGDVVEATDVYLNEDTEEELQLNI*
JGI25922J50271_100364404	F001019	AGGAGG	MSNYEPSLEILEVNYSCSPGGVDTFEVYDKGDNAGIMDIPIYETESLTEAVQYCYNLGKDFIVRTYAEWEMRELASL*
JGI25922J50271_100364405	F000441	N/A	DIYINEQLNKAQKLLWGGSETENIEAHNIIAKLIKDRMSEQEGTNE*