Scaffold JGI25922J50271_10019188

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10019188
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1744
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024314	Metagenome / Metatranscriptome	206	Y
F084234	Metagenome / Metatranscriptome	112	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100191883	F024314	GAG	MDSDQQKLTPEQAQAVLLFQIEQKLRFVIADQVEKKFHGSYHGASHDIAQFIRNMV*
JGI25922J50271_100191885	F084234	AGGAG	MFDFISAPFEWFANVVQYSLIFMAIMMLVLTIGAVVAIPLGLKLLGVAFAKTIVVETSKVFRDLGITSIDLKQSKDTQKMKSYLDRKVVPILSKSG*
JGI25922J50271_100191886	F095473	GAG	MRTCQIRNCTSTELVYSGTDAFMLGINTETYCYDCANTYAQIDRVMSKVRQDYLDSLTPVSSLTTSD*