Scaffold JGI25922J50271_10014590

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10014590
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2058
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001460	Metagenome / Metatranscriptome	690	Y
F007644	Metagenome / Metatranscriptome	347	Y
F031497	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100145901	F031497	GAGG	MXTPEIKVAESLVNLMDDHWFNPTMFGRYLAEQPLYTIDRVMEMVVSVISEQAKIYDVYLNRGTSSEGLLLANELNECIKAYQQDNNLNNLKLPSRSYKVKREEPLVRQSQFGWKEEEDPFS*
JGI25922J50271_100145902	F000852	GGA	MTTKREYLKQQGITVGVRGRFSGAAKVALAEAVAKGVTFTAETPANKAK*
JGI25922J50271_100145903	F000441	N/A	MKMSDNYLNDQLNKAQKLLWSGSLHEQDEAHNIIAKLIKDRIEQADLT*
JGI25922J50271_100145905	F000263	AGG	MNEEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAIGARTL*
JGI25922J50271_100145906	F007644	AGGAG	MTKSSQFMEYMKLHLISLEQDLEMNPESINVIDIPGQIEATRHLLSVATDIMNSTNERYNNE*
JGI25922J50271_100145907	F001460	AGGAGG	MLGYTKEDLDRMTNAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFD*