Scaffold JGI25922J50271_10012976

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10012976
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2205
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008235	Metagenome / Metatranscriptome	336	N
F016959	Metagenome / Metatranscriptome	243	N
F045698	Metagenome / Metatranscriptome	152	N
F059897	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100129761	F059897	N/A	MRLYSKNNKDDLFDRFEIDINFPIFKCGTKPGNEWATDFPTKYIDIKFDTHLVYRKDVTWTYFELLFLGFGFTITKQTSY*
JGI25922J50271_100129763	F045698	N/A	MNLPTKQPDVIDLTKSIRETHYQLQLDYQALMLKATTLQAENEELKERLAKIAEKIQLDI
JGI25922J50271_100129764	F008235	N/A	MINYLKNLFKKKTEPETTPVEQPKNNYYLAKYRANVSLHITYNQLDTDGYHEYRQYENIESDDNAVFLEQKNKSIKVYQEVISNINEQLKDNSSEYIMVQKVFLFKKSDFVNAKIIIKDNDLYESTN*
JGI25922J50271_100129765	F016959	N/A	VKPQWPTLKDRLQHPLKDELTALHQLKQVLPLSKQAQKLYDKLSKKSIQEKD*