NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25922J50271_10010179

Scaffold JGI25922J50271_10010179


Overview

Basic Information
Taxon OID3300003413 Open in IMG/M
Scaffold IDJGI25922J50271_10010179 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2541
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048300Metagenome / Metatranscriptome148Y
F061851Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
JGI25922J50271_100101792F048300N/AMTDDNRSKTYRKTHTTLDISGAVALGFAEKTFQMLSTDAGNALKRPWHKLERGLRIGRLREYVARETEKMHLNPEDADFLFKLLSKGLDXKMLSXKAAVLYDHDTEKILEIKGLVAHSTADGRTKYQLLEKKIVTTQKKRGPQPPKELLANNSNE*
JGI25922J50271_100101794F061851N/AMSVPIPTVNISSVPLPQFIPRSRREYSTRDVTNARNIEIQRSAPAIQQAFFRPEPSTADTGFPRPGVAHYDQNGLSTRQNKPISIPAPMFDPAGPKLVGNVFFDQHAPEFDPRNVVRELRGSVKDDKVVRGELESQRILQRGFSSRYVPXGFAE

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