Scaffold JGI25922J50271_10009008

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10009008
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2722
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001460	Metagenome / Metatranscriptome	690	Y
F023344	Metagenome / Metatranscriptome	210	Y
F047059	Metagenome / Metatranscriptome	150	Y
F050377	Metagenome / Metatranscriptome	145	Y
F085700	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100090081	F023344	N/A	MEAFTDTVGEHILGAIQVDIEQALFEDWNNANLDEGEAYAEYRFMQFAPDNLKQSYNEYYGYIEGDEFCL*
JGI25922J50271_1000900810	F085700	AGGCGG	MAKANEFKAAEKLTDYLNNANFSPAVMANVLTTEHTLYTQDRLMELVRYIIQYNSLRLKSEWDKGYTSEGLLLADALNDMLEAKYGAVDRNLTIDSLKETRVRDPKYIMDLDSF*
JGI25922J50271_100090083	F001460	GGA	MLGYTKTDIDNMINSVHDIKLFYIRTPSDLIDKEPLIKNLEMTISFLQGLWAEGYFDGYED*
JGI25922J50271_100090084	F047059	AGAAGG	MATKTSTFLEYMKIHLISLEQDLEDARNNIPLNEDEYFESDAYYMGAIDTMRHILSVASDIMINNERNINESGRHWTPATFTTFG*
JGI25922J50271_100090085	F000263	AGGA	MNQEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGARNEA*
JGI25922J50271_100090087	F000441	AGGAGG	MKMSDKYLNDQLSKAQKLLWGGSETENIEAHNIIAKLIKDKIEQVEL*
JGI25922J50271_100090089	F050377	AGGA	MTSTPTTTREYLKTQGISVGKRGRFSAAALGAISKAAQEGVVFTDKKNVK*