Scaffold JGI25922J50271_10003541

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10003541
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4474
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F005389	Metagenome / Metatranscriptome	402	Y
F009005	Metagenome / Metatranscriptome	324	Y
F010683	Metagenome	300	Y
F011393	Metagenome / Metatranscriptome	291	Y
F018718	Metagenome / Metatranscriptome	233	Y
F048784	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100035412	F000785	N/A	MRVTNKRIGMKFDCGKLLRWAEELLGPSKCNTIAFTWDMEEESLGWYDWDNIIWINLASCKRMISVQKTILHEWTHAQQTYRWYNHYQLKYGYKNNPYEVAARENEKLVKRAYKKKV*
JGI25922J50271_100035413	F011393	N/A	MSEQVANNRCEHCNVVLHENESGEYYPVVNRLEKHTLIRGEYHPIGSRFQYPRNWGKKKGATILLEHRIEDVRKQIADAQLDLDKLQACLEKVQQWDSTEK*
JGI25922J50271_100035414	F009005	N/A	MSEIEMIEKARLVGMDEELVSYAKQIQRQLGSEGDTADWLDCLEMAYNELIINQL*
JGI25922J50271_100035415	F048784	GAG	MNKTTQKLVSVFSQDELSSIMTAVAGYVNTKRKQGRSTAIETLAFNKIVDALLVSNYLNAEEVEVKTGRIGVAEGKLLIANEL*
JGI25922J50271_100035416	F018718	GAG	MTIREFYLETYPTDDLGLELNPTPTFAGLLNQLIVGGDVYRYIGVGDSIIRERLFERLAEELNVKYDYVYNLWLK*
JGI25922J50271_100035418	F010683	N/A	MSKKVTKKVVKPVKKAASKKAVAMNIIKHKRVVLEQVGTESLPDMVFISAAPAWAKAIVGKRYVSLDRAKAIIEALDAEKLINKGAKSILKEMDAAGITPLDVDNI*
JGI25922J50271_100035419	F005389	GAGG	MANKSKAAAKRGNIYETVSNNIQKITRPSGTVSYRVRVSEDGVMYSQYETSLKKAKALRNSWVG*