Scaffold JGI25922J50271_10001899

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10001899
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6053
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002935	Metagenome	519	Y
F020171	Metagenome / Metatranscriptome	225	Y
F031497	Metagenome / Metatranscriptome	182	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100018991	F031497	AGGCGG	MGKTPEIKVAQAIVNLTEDHWFNPAIFGRYLAEQPMYTIDRIMEMVASIISEQSKIHGVHGYTSEGLMLAVELNECIKAYQEVTQLNNLKLPARSFTIKKREEPIVRQGFGWREEEDPFSL*
JGI25922J50271_1000189910	F001125	GGCGG	MGDRANFGFKDRKGDTVFLYGHWAGHRMLENLADAVSAAEPRWGDEEYATRIAISHLVGDEWKSETGWGISINRLADNEHKVPIINWAAKTFTLMEEDLTTEVFSITLDAFVTKYSSQPSMV*
JGI25922J50271_1000189912	F001043	GGAG	MSDYKDGFDDGYKFAREEIMEKLAEIDIADIDSWILDRLSEMIEGGNL*
JGI25922J50271_1000189913	F000311	GAG	MYFELTAPSQVAFARAIWDAELIGLDPQTIAPLTFNIGTGSIEKVSKIRDKYNLKETYTSDYEPTGYTGR*
JGI25922J50271_1000189915	F002935	AGG	MRDRTKGYVGNVLDGKKLAIIATEIVKAQYNNPSELTVDNLLLIELEEKNVFGDPKYAVVCSEGVGWEQDEYGCLEIPTNIGAMGLYNGRVFISIDKVKSCQTLFKEDISDYIRTFGDRLDRNCSLWQSKMSVEPATILG*
JGI25922J50271_100018992	F000852	GGA	MATKREYLKQQGITVGVRGRFSGAAKVALAEAEAKGIKFTAEVPAGKAK*
JGI25922J50271_100018993	F000441	AGGAGG	MKMSDVYINDQLNKAQQLLWGGSETENIEAHNIIAKLIKDRIEQTDLS*
JGI25922J50271_100018996	F084239	AGG	MEYLKIHLISLEQDLEQIDYVNGHHFYRVKQAEIENTRHILSVATDIMNSSNERYNNE*
JGI25922J50271_100018997	F001460	GAG	MMLGYTAEDLDRMTNAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFD*
JGI25922J50271_100018998	F020171	AGGCGG	MAELFIDTIAEHITGAMQQEIGEALFDQWSYNNLEEGEAYAEFRFMEYASRELKQQYNEYYGYIEGDEFLL*