Scaffold JGI25922J50271_10001884

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10001884
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6079
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038238	Metagenome / Metatranscriptome	166	N
F066770	Metagenome	126	N
F093854	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_1000188415	F038238	N/A	MKLDYQGRQLKLHQRATCLLELLKKAQGEQARQEGLLAEWRAAGSYDNVRLFTHENNYLIRLAELNDIQKRILKSYYWLVVELYDITENFILPVNRIQ*
JGI25922J50271_1000188417	F093854	AGAAG	MSYIDNTKGNMMKEIYILELENEMLRKQITKLKIELNELLDSTQRTETKNEQERKGTIG*
JGI25922J50271_100018844	F066770	N/A	MKYLFILFLFGCGVSAQKIDKDIEFEELMKQVNATNVKSATVLAKATKKEKQLVTNAVATITQMKSEISELKSEISQFKVDTIYIHDTILIKEKKNFWGKTKTDTTN*