Scaffold JGI25922J50271_10001577

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10001577
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6570
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011668	Metagenome / Metatranscriptome	288	Y
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_100015772	F034182	N/A	MDSHAFHTLVGTSAPAAAVLISFSEVEAWLRILSLLMGICIGAVSLYKMTRPKKP*
JGI25922J50271_100015774	F011668	N/A	MNAKSIALWMIVLSFAFLGMALLTSCAGFNNPAVCIKTDYGTFCYTPEFSKTLHDK*
JGI25922J50271_100015776	F048162	N/A	LKKKKQPTVESERTEALAEAKRILSEHYDCGLTIVSWEQGGETMHGEFVFGNKYAVEGLASDSFSILFPDTEEEEEDEEA*
JGI25922J50271_100015777	F025459	AGGAGG	MKMTLEYDETERYEHEVACKALDILILVDDIDQELRSALKHESGAFAKMDEDTMEAVRAWIWEQRSERNIPELK*