Scaffold JGI25922J50271_10001418

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10001418
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6982
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001043	Metagenome / Metatranscriptome	794	Y
F003422	Metagenome / Metatranscriptome	487	Y
F007644	Metagenome / Metatranscriptome	347	Y
F009685	Metagenome / Metatranscriptome	314	Y
F021288	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_1000141810	F000868	AGGCGG	MSFLENENQMVIDAEYSYIGEQLVEEWVNSNLDEGQLYADYRFAEMCDSNYLKGRFNQFYDLNPNDQYYVEWDEEK*
JGI25922J50271_1000141811	F021288	AGGAG	MLGYTQKDLADMTYGVYQADLLIDADENPAIHNYLVTAHDFLQGLWAEGYFDHA*
JGI25922J50271_1000141812	F007644	GAGG	MSKSSHFLEYMKLHLISLEQDLEKNPESINVIDIPGQIEATKHLLSVATDIMNASNERYE
JGI25922J50271_1000141815	F009685	AGGAGG	MKMTDRYVDEVLAEAQRLLWGGSETXNIAAHNMIAKLIKDRMEDQKNS*
JGI25922J50271_1000141816	F000852	AGGA	MTTKREYLKQQGITVGARGRFSSAAKQALSEATQKGLTFTAEKPTKK*
JGI25922J50271_100014184	F003422	AGGA	MSVGWCIILGMSNELMSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTKLTCPCGRDTTLVSVEHATIQPTTTTKEEQMEETTIGSDALHSPAVEYNPNLLVTYKVIHGYSDPEFTTAKVSSLEWDLHNARQAQKTNGVLTNKISLVKDIITEAYSESEDQETLRAIAEALDIELTRQVEFTCTIEVSGTMEIDLLSDWGNDLEDEVTDNLYVDSQSGRIEIGDIEICHVREA*
JGI25922J50271_100014185	F000311	GAG	MYFELTAPDRLSMERAYWDAQITGLDPQAMTPLTFNIGTGSIEKVSRIRDKYNLSESYVSEYEATGYTGR*
JGI25922J50271_100014186	F001043	GGAG	MSDYKDGFDDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGGTL*