Scaffold JGI25922J50271_10000285

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10000285
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15124
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001834	Metagenome / Metatranscriptome	628	Y
F002135	Metagenome / Metatranscriptome	590	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002357	Metagenome / Metatranscriptome	567	Y
F013618	Metagenome	269	N
F017290	Metagenome / Metatranscriptome	241	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_1000028510	F013618	AGG	MTVFTPEYQLTVNGVEYTNVAISDIAHQAGREDIYSQPNPSYLQIELVALNNENYNLQVNDGITLQVKDSTNTYRTLFGGNITDITTEVATASSIAETFTYTVLALGSLAKLPKVIYNGTLAQDDDGDQIWELLSEIFLNNWNEVPAAETWSGYDATTTWANAENVGLGEIDRPGVYELENRTADPDTIYNIASLIANSALGVLYEDNEGRISYADTTHRQNYLANNGYTEISANTAIGAGLKVLTRGADVRNEIILNYGNNYGSQKTAIDLTSIATFGYRGETLNTVLHDATDAQAVADRFIALRSYPRALFDSITFPLTNSAIDDADRDALLQIFVGQPMRITDLPVQIAPTQQFEGYVEGWRWSTRFNELFLTINLSPIEFSQVALAWDQVSASEAWNTLSGTLTWENAIGAVA*
JGI25922J50271_1000028516	F002135	N/A	MANTRKPIKRKKINRRVVRRTPDPLSKLDQWYIAKHEMFRAARKAGFTESVALYLMDSPESMPDWIVGDKGIIPVIPTPDEDED*
JGI25922J50271_1000028521	F002357	GGAGG	MAFNLEDYEDVATLNKWFITNYPMGRSDISVISHDAEKGYVLVQATLWRDAKDTSPAVSNIAFGSRETYIQNMKKFYVEDTATSSLGRAIILLKGSDKTATKDDMKKVENNPSFKEKLESRQNMYGKPGSKSAQIETILRDSFEADKSADPVVWSVGEVVDQIAASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKQCEPKWAKLTANGKWYFEGGE*
JGI25922J50271_1000028523	F002162	GGA	MPNYEYFCDGEGSLIVLDLLMDHKIPQCQVCSAPLRRIYTAVPTIFKGTGWAGKDG*
JGI25922J50271_100002855	F001834	N/A	VPSTILSDVRTPLATAMATVASNVYNSVPESVYPPAIVIVPDSPYLELETINKSTIHAKINFTITVAVAYNSNPASLDNIEQLIMSVLAVIPVGYIVSSVERPTVSQVGASTLLISDIRVSTYYTQTA*
JGI25922J50271_100002856	F017290	AGGAG	MATTVITGRDVGLSFTGGTDIQAQATNAVLTKVNDRQVYQTMDGEAYKTTNISATFQLDMLADWGKTSSVCEALWTAAESAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGVDAQTVSFTFTVSKGAVVETFS*