Scaffold JGI25922J50271_10000017

Overview

Basic Information

• Taxon OID: 3300003413
• Scaffold ID: JGI25922J50271_10000017
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52501
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (20.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017124	Metagenome / Metatranscriptome	242	Y
F049574	Metagenome	146	Y
F058961	Metagenome / Metatranscriptome	134	Y
F066738	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25922J50271_1000001725	F017124	GAG	MKIELQPYCHTCGDGCCDEYGYNVLVDGKIIGSIGEDAQELADLLNDTFIS*
JGI25922J50271_1000001764	F049574	N/A	MYSQSVYPIQRVENNDTVVVMTKGQAVAMNKRFLIMDSTIKAYDEAYKLKYFQHNESKKAIAKQDSVIADINRQLLTKPSFKKMTQTDVLMSSYFILFSTALFYMSFK*
JGI25922J50271_1000001765	F066738	N/A	MTRTILLLATGIAVGTLIAKKSESTKSVDPVDLIIEKSNQTMRKASAVSAKADKVVAGKITEMKQTIEVLEEEKEQLVEQVTVMQNEITTIKSAPVQPFDVLAIGVSDTASRK*
JGI25922J50271_1000001768	F058961	N/A	MAKVKQELLDAVKEVQKNLQAIQMELGAIALAELRKDALLKAYEEQQAKGKEATDAIQAEHGDGSVDLETGEFTPAPAPEAEVVE*