NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25911J50253_10090912

Scaffold JGI25911J50253_10090912


Overview

Basic Information
Taxon OID3300003411 Open in IMG/M
Scaffold IDJGI25911J50253_10090912 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)949
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079801Metagenome / Metatranscriptome115Y
F081077Metagenome114N

Sequences

Protein IDFamilyRBSSequence
JGI25911J50253_100909121F079801N/AMTFITENNIANLYSALIDMPIFDEFKLPPASRVDFVIVHDDTICGQYEPPEQGEPHVITISTARHSHLYPVLMTLCHEIIHMCVYIDS
JGI25911J50253_100909123F081077N/AKEVARGNRYLAEADKLEKAIENHVIKLKQPELITQFRDARKYIAKTFTVEKALNPQTGTVDAKKIAKQLDQGVPITDELALVGKYAKAFPKTTKVVAEAPAPFSVLDLYGAGAGAFGDLLTGVPALSLLAPARIGSRYGLMTPQAQQMLATPQYTPRTAPFVPYQGLLNIQE*

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