NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25911J50253_10061680

Scaffold JGI25911J50253_10061680


Overview

Basic Information
Taxon OID3300003411 Open in IMG/M
Scaffold IDJGI25911J50253_10061680 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1242
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y
F019476Metagenome / Metatranscriptome229N

Sequences

Protein IDFamilyRBSSequence
JGI25911J50253_100616801F008688N/AMNRFNKIMLGSLAAILLTAMTIEPPKIKVYLIMSYRGNDLAIEKVYLKKGNAEKYRDMYKDSHN
JGI25911J50253_100616802F013524N/AMKTNKEVVNRLXEFTXXNCNTTLDPKLCEDIRYLCDEVXRFGVQMXLMNEYGDEDYITIQKYKSKLEKCQSKLNQYEPF*
JGI25911J50253_100616803F009135N/AVDFLFLPKKMMSKPKYYLKVNLPATFDDLDAEVIKKDLITYINSRNQYGALYGPKSSKKGIVVEKIIYSTNED*
JGI25911J50253_100616805F019476N/AMKFQDFRMSQILTVKVMNDNKTKSARIILDIEWESDDDSDLPSLWDWKRIKMPMNLTKVKYLGIHTQSGPENVSNWMGN*

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