NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25911J50253_10010672

Scaffold JGI25911J50253_10010672


Overview

Basic Information
Taxon OID3300003411 Open in IMG/M
Scaffold IDJGI25911J50253_10010672 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3485
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032582Metagenome179N
F043909Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
JGI25911J50253_100106721F043909N/AMMKDIIRSLSLKALKRFASGGDSPADLMAEIEELRKTLEVRTQEHEEHLTEVREERDHWLSLYDEVKFAAEFLMSYAKNDVPKLSEQTDWETGKIVLPQDVGTYYFNPAIMLEPDGRIMLFARRCRNKRQNDEDLYIEKNDIVAFELGQDLRATKKSILQLTTHYPLEQFEDPRVVKFGEKYGLACCTFIPFKSYAHQGMFLLDKHFLNVGRFDMIYGNNYAQAMINDGHEKNWLYFVHDNAPHMVYSANPHVVVRLNGRLEKEEEYVTEEFNPLWKFGEVRGGSNPILCNGLYWTFFHSSL
JGI25911J50253_100106722F032582N/AMKVDFENTPTFIVSKPDGEKEKRCIRYMKSFGIDAVPIYGFRSHNCGISTDYYHTREKEKAKCKTIVAGLSHFSVWSAIKWMVESKVTDHRTFLIVEDDVEFLDENWKAKANDNLEFLPNDWHVVYLGSCCADPIEDHGHIASNLYKLVRGMCTHAYLVNYEGVCKLLETNQKVWAPIDVQMLIDSMPRMNFYGVLPRLATQENTNLYP*

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