Scaffold JGI25911J50253_10010672

Overview

Basic Information

• Taxon OID: 3300003411
• Scaffold ID: JGI25911J50253_10010672
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3485
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032582	Metagenome	179	N
F043909	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25911J50253_100106721	F043909	N/A	MMKDIIRSLSLKALKRFASGGDSPADLMAEIEELRKTLEVRTQEHEEHLTEVREERDHWLSLYDEVKFAAEFLMSYAKNDVPKLSEQTDWETGKIVLPQDVGTYYFNPAIMLEPDGRIMLFARRCRNKRQNDEDLYIEKNDIVAFELGQDLRATKKSILQLTTHYPLEQFEDPRVVKFGEKYGLACCTFIPFKSYAHQGMFLLDKHFLNVGRFDMIYGNNYAQAMINDGHEKNWLYFVHDNAPHMVYSANPHVVVRLNGRLEKEEEYVTEEFNPLWKFGEVRGGSNPILCNGLYWTFFHSSL
JGI25911J50253_100106722	F032582	N/A	MKVDFENTPTFIVSKPDGEKEKRCIRYMKSFGIDAVPIYGFRSHNCGISTDYYHTREKEKAKCKTIVAGLSHFSVWSAIKWMVESKVTDHRTFLIVEDDVEFLDENWKAKANDNLEFLPNDWHVVYLGSCCADPIEDHGHIASNLYKLVRGMCTHAYLVNYEGVCKLLETNQKVWAPIDVQMLIDSMPRMNFYGVLPRLATQENTNLYP*