Scaffold JGI26086J50260_1001259

Overview

Basic Information

• Taxon OID: 3300003410
• Scaffold ID: JGI26086J50260_1001259
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15011
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005937	Metagenome / Metatranscriptome	386	Y
F010314	Metagenome / Metatranscriptome	305	Y
F076625	Metagenome	118	N
F096244	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26086J50260_100125912	F076625	AGG	MGWLNGHPIFFIMIEQKIKILSEYLSKQTNLTWRESKAFDEIVDHCMQLDNHYKSKSLHLERIASWYIDHTFEINQDYIDEVSYEFIKNILLRKLELILQIPAESNYVSIENNMMALDIKNNNELKPYGAISEAIKLFVKDIIVYNTKDEYETT*
JGI26086J50260_100125920	F005937	N/A	MKVDLDGDGKADVSISITQIITIAAMFASIIGSYYTLSGKIETNSSEVAKLKYNEKEYTWKAQRQLEAEVRTITLEMRDFMKDLEYLKVDKKR*
JGI26086J50260_100125921	F010314	N/A	MENLKIYLLNGTALALSISEINPILQTISLLLAIGYTIIQISKKLK*
JGI26086J50260_10012599	F096244	N/A	MNIQIEFIKGFLIGIDYLEGVGYSDFDNGDITFDLLRISLGIIFIHIPLNVRDTE*