Scaffold JGI26088J50261_1005133

Overview

Basic Information

• Taxon OID: 3300003409
• Scaffold ID: JGI26088J50261_1005133
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5667
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025991	Metagenome / Metatranscriptome	199	Y
F028500	Metagenome / Metatranscriptome	191	Y
F028789	Metagenome / Metatranscriptome	190	Y
F073289	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26088J50261_100513311	F025991	GGGGG	MRCNCCNVVLTPFESTIKRVSDNSYVDMCEKCFSYIADEVKVLTREDLRAEVGTDVANYVDYEDKKGIYD*
JGI26088J50261_100513312	F028500	GAG	MYEIRTVYSNLIVYRTTVRDNAVYWLECNNQEGMFKLVRVKKNDS*
JGI26088J50261_10051336	F028789	AGGAGG	LTETTCTGNVTLIRENEDGSADYQFNFPPEALEALTRLGILTALQAAIEDAKRLNPEEQDD*
JGI26088J50261_10051337	F073289	AGGTGG	MVKLEIEQYGYCSKTGVCFNPFGIKPEWVQKRAYKIRHGLLIEQTEEALF*