Scaffold JGI26088J50261_1001624

Overview

Basic Information

• Taxon OID: 3300003409
• Scaffold ID: JGI26088J50261_1001624
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12000
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082526	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26088J50261_10016247	F082526	AGGA	MKINEITEEVIPVNNTEHAVERLKVAAELCSKMGNQPILYRAMHGGEYHGGAKNNLIQKITNPARKGVMGNFNPIQTAVLKGLNIASPAQTTTVAPASNSNYFGTNHIIIPGSDFTAYWNPDIDDLGGFKGYDPQYAQGAGPRGSTISRRDEPEGEELQKILSGYQKGIPSYSQHKGEVILDTEFYYMLNLESFLSKFGGKKVKELITIDNRKSFAAIKQDLLVDKFKTYRDVGWYLANPATNMMKWIASKEKERQ*