Scaffold JGI26088J50261_1000442

Overview

Basic Information

• Taxon OID: 3300003409
• Scaffold ID: JGI26088J50261_1000442
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24927
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F060432	Metagenome / Metatranscriptome	133	Y
F071780	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26088J50261_100044230	F060432	AGGAG	MTYEITHKQRLELLEAHNNLRTALSNVSECQDLWLSDVGNLEKLQYSLHRIFKFVPSQDEDGRSMYWGAWVLSEEDSNDD*
JGI26088J50261_100044231	F002430	AGGAGG	MITINLPPKQVNAILVALDTEIEIQLGFVPDWETFPEIAALLMAYYTTRCKFEENQDDI*
JGI26088J50261_100044234	F071780	AGGAG	MTLVLSDYERGYLTCFYDTVVFDSIAYDDDEDWFGVQIGDRMFDINSRIDEDTGKVIAIVYECNKVHDNWETNRQNYWVLTDEENKDG*