Scaffold JGI25920J50251_10024948

Overview

Basic Information

• Taxon OID: 3300003404
• Scaffold ID: JGI25920J50251_10024948
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1860
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010530	Metagenome / Metatranscriptome	302	Y
F014013	Metagenome	266	Y
F027510	Metagenome	194	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25920J50251_100249481	F014013	N/A	VIPANPKVVNSRPYTGNSDGASASHLPGMDEWIRQAIKYGGGAFWNNGSWGIRNMRGSENLSVHATGRAVDLSYRPSEKYPTANRKASMAFLRILIANANELGIEQVLD
JGI25920J50251_100249482	F027510	N/A	MTVNNLPKFLILLVGLLCLTAXMIFDKIDMASGVPMLTMIIGYSIGNGVNAKQGGESSNVFGNKKSK*
JGI25920J50251_100249483	F010530	GAGG	MXDYSKILTANYASAQWSLAGDSYEGLTWLDSTPKPTQAELDAQWPAVAYNDAYAQVQTTRRTQYEAQSDGLFFEWQRGTNTQAAWEAAVDAVKAANPYPPAP*