Scaffold JGI25920J50251_10022120

Overview

Basic Information

• Taxon OID: 3300003404
• Scaffold ID: JGI25920J50251_10022120
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2011
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Luteolibacter → Luteolibacter yonseiensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053134	Metagenome / Metatranscriptome	141	Y
F098558	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25920J50251_100221202	F098558	AGCAG	VTFCWDATEDTDSYTLYINGVPVGSTTATEITVQIPDGRTNANVTAVNISGESEMSDTLVVPPAPKTPRGFRISKIIRTTISTPR*
JGI25920J50251_100221203	F053134	N/A	MKTTILGLLAAVAAAIQGIVQQGHSIDDWKTWILPVTLAVLGYLAKDATPA*