Scaffold JGI25920J50251_10006558

Overview

Basic Information

• Taxon OID: 3300003404
• Scaffold ID: JGI25920J50251_10006558
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4098
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009073	Metagenome / Metatranscriptome	323	Y
F017129	Metagenome / Metatranscriptome	242	Y
F024306	Metagenome	206	Y
F053303	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25920J50251_100065581	F024306	N/A	FLKMFKTESVKINSILGEYPVVMGEYPKKYHSEIKRELAGAGFGSVSNYLVK*
JGI25920J50251_1000655811	F017129	N/A	MRTMYNNPNDIQAFEALESERATIELDPQYQQWVAELNVSQSYVDPEGTIKAKYLTDQYSFSTSEPKSSILNFLKLKGIWS*
JGI25920J50251_100065583	F009073	N/A	MKNYQILLTAIGSFFVGVSILNGTAQQYVYFAGPMNELGCATIALTMGVLSTFAIDWKGFLNYLXK*
JGI25920J50251_100065586	F053303	N/A	MSNLKIQIKGTIYQITEKAFRSTDYWQKPITPYFYASYVAAGQLVKQWANKNYPGIVCRVKGSSFANGNSMDVRVCMPDGSPIPDADYRAISSFAKQFEYGKYDGMHDMYESYTTSGLITDNGTVIQAGVKYVSVDNRPSFGTIEWARWELSTGREYKDLSXYCDTKILDKALGL*