Scaffold JGI25920J50251_10002067

Overview

Basic Information

• Taxon OID: 3300003404
• Scaffold ID: JGI25920J50251_10002067
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7260
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015061	Metagenome / Metatranscriptome	257	Y
F089880	Metagenome	108	N
F097609	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25920J50251_1000206710	F015061	N/A	MSEKNQQNETSKTILEAFSFIKCEDEKLNERVHAFASLLHTAAMMVIRSESRKGEGFECIKYLELGFLYYKESQFRKRFDTEEKEEETSRIIT*
JGI25920J50251_1000206712	F089880	N/A	MKKELELFSPTQEGILVPAATYLRQMAEFVKTEWPGFAITENHIKKAWAKLQKNEYLDDGTPDEMLEMYEKMSADWDMALELEEERXNVTNXPVEEPVNESLALIESVKDGLELSSFTKKFDIGAGMTQCVPRGKVEMKDWVAAFAFGLTLESGAQWIVGDSVVALENAGHDDVINQLCANFKKSYSTVSGYARACRAFPAEKRDASLPFTVYREIGNANFGDAKTNAKKQQAMLEVAKVEGLSSTEVRNRVRNEQGKDDKSVPPHRYLNLNVGNYSNSEVLRSVPEKLEAHELLIDRQDMSWFDAAQGEWVKFAKEQ*
JGI25920J50251_1000206713	F097609	N/A	MSNQLEGLEPKDIIKKVTGTITKLFPEKQHEGNFGPYTIQNGEIEVDGKSLKLAFWKNTQPESAKGRTVTLSSTRGKHGLNGVTFEEENYKNKEGQSVHNEVIKVSASARVEYEGVSDEPVRVSPKSIVSDNPTEALDSIVELHKYVDSLVRHAYKGVQNEETLRSYVSSVFIEANRKGIAFKNERPEPVKVEPPKVDPADWASAIVPSGTQKGKKLAEIGKPALTKLYEFYLEKGFSTPFAKCVEQAAADLDLDAPVETDDIPY*