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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300003404 Open in IMG/M |
| Scaffold ID | JGI25920J50251_10001257 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9071 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007579 | Metagenome | 348 | Y |
| F019829 | Metagenome | 227 | Y |
| F054621 | Metagenome | 139 | N |
| F067738 | Metagenome | 125 | N |
| F072334 | Metagenome | 121 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI25920J50251_1000125711 | F019829 | N/A | MTDYPIPDPGLTESTRQMYSDKYAETFKSFVDEILKPVITPIAKPIDHSILLDEMSILREKYLAGTPSAEHKFAAAVIACAMAVIIGI* |
| JGI25920J50251_1000125713 | F072334 | N/A | MTEKVETPDTQLQKVTLLVAMHDYSPDDLNAGDWLLNVLMACAEQKNTAYYGAKEITKVMQILSVQDCEVVVSNGL* |
| JGI25920J50251_100012572 | F054621 | N/A | MGQLPLQIEGIQETLKLLNDIDPKFRRRVTIQIRNAGASILSEARQMVASFDNSKGNGAPLSGMVRGNLVKGRETTWRTDAVQKGFKIKVGVRGSKERYVNFDRGGYTEQVVYGSKPYRLMTVQSADAAGVIYDHAGRNTDGQFITNLNVEEGNQPRVIDVAVDKNKEAVIAEVLKVVEQVMAVTNRQMKVR* |
| JGI25920J50251_100012576 | F007579 | AGGTGG | MPTPTKQQIDTQIGNATRELAPGTTWKYNEPGDGYYCLEWMDDPALQPTEAATMLKATELATNPPTVA* |
| JGI25920J50251_100012577 | F067738 | N/A | MQALWVALVAGGFTVLVAIINRADKTSQKDHAETYQALGRIEQKIDGHVTNHEKS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |