Scaffold JGI25920J50251_10000336

Overview

Basic Information

• Taxon OID: 3300003404
• Scaffold ID: JGI25920J50251_10000336
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15822
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F000506	Metagenome / Metatranscriptome	1070	Y
F002135	Metagenome / Metatranscriptome	590	Y
F013887	Metagenome / Metatranscriptome	267	Y
F028151	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25920J50251_1000033610	F002135	N/A	MATTRKRRKINRRKVRKSPDPLSKLEVFYIAKHEMFKAARKAGFSESVALYLMDSPESMPDWIVGDKGIIPTIPTPDEEDD*
JGI25920J50251_1000033614	F013887	AGG	MKDYLDQAILKLRPNSEFTYTERDYSTIQWFVLQGVAPTQKQIDDAIEQVKADEITEAETKATAKASAQAKLAALGLTVEDLQALGL*
JGI25920J50251_1000033619	F000506	AGGAG	MAKLKITRANGEVSEHKITPGVEYAFELKYGSGISKVLREHERQTEIFWLAYECLRRAGAQIPLWGSEFIDTLDTVEVLDEEKK*
JGI25920J50251_100003365	F000141	AGGA	MHPQFKCNGCKRKTEFLWLDQLDMPEGFKAYQCMECGCVGVKNIAEALDVPDSDISRCDKCGSWKFITVVCHTCQLIGAK*
JGI25920J50251_100003368	F028151	AGG	MYAELKDFGYILMWGIVATTTIAWIIYEIRDTAFQNGYWKGRAQGWESHRRLMNTKLKSDEVFDYDKN*