Scaffold JGI25907J50239_1015889

Overview

Basic Information

• Taxon OID: 3300003394
• Scaffold ID: JGI25907J50239_1015889
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1714
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25907J50239_10158893	F009004	AGG	LVTHTNLNTMKTEFNKVIDFLETQQQENKLNTNQLHLIIQTLATFLDDEQLQEVENLFNQFKK*
JGI25907J50239_10158894	F034772	N/A	MKNLIDYFTPTTQEHKXFLXHFLSTLTAFIVFGGMFYCLMYFKAL*
JGI25907J50239_10158895	F009958	N/A	MENRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEYAFIELDVEVSEKWLTETDDNLQPHVLGVRILEDLRLEIQEAINSDLVHYNFWEWKASNDESNYNFYHEL*
JGI25907J50239_10158896	F006463	N/A	MNTGTIYEQMDWWKRQWRGSFDLHLYLEICRIKKNENQIQKPMKXFKATFKTXAYVGAPVKLETRIVEAYDVQHVKNLIQKNDDII