Scaffold JGI25907J50239_1013429

Overview

Basic Information

• Taxon OID: 3300003394
• Scaffold ID: JGI25907J50239_1013429
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1894
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046906	Metagenome	150	Y
F066529	Metagenome	126	Y
F081034	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25907J50239_10134291	F046906	N/A	MFIYDQETNSQTKEATDRGERQTNAMGDSYGKHHPVSLCFGYGNQLYAWPLGQRSGQRRDIQDDFTRFFYSYRRHDWLPEWYQANAK*
JGI25907J50239_10134292	F066529	GAGG	MIDKIRWFPIIDATGYPQKTDGTQRRIEKHQEEYRAIVKAAKAEEKLDDLLFELYCKKAEQQEIRLEIFTNRKLDVYL*
JGI25907J50239_10134294	F081034	N/A	AQPVAEITKEITGSDLAATIAALGVSGAVGKYTGDVAGRIAAGKQPTTTMADVQQKASRAYTKVSDQGIEISGQNATSLVDKIKTRLDAVDYIPENAAPVANILNKYESILQRGNITFDNIEQMRRLANNLKSNPDKNIRRLASEMVDSIDDHVAALSPKDVVSGAGGIDVAVKTIMEARKDFRNLSRATTLQNVLDIAETKALNPTASESELIRQGFITLAANKSKMXLFSKXXXNAIKAVVKGSSLDPLXTLMAKFNPXRSQXMAGGAFAGSIAKPEIAIPIAAAGFGADKXQALLRRQSAEKAMSGLLTGTTPGPQPSYYTRGLLSTMMNPPQ*