Scaffold JGI25907J50239_1007306

Overview

Basic Information

• Taxon OID: 3300003394
• Scaffold ID: JGI25907J50239_1007306
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2645
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003456	Metagenome / Metatranscriptome	485	Y
F003784	Metagenome	468	Y
F004110	Metagenome	452	Y
F009331	Metagenome / Metatranscriptome	319	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25907J50239_10073061	F004110	AGGAG	MAWAMTRAADHTEDLMEPIEERRRHNEQRIAWQMRRVAERYARKEKASKSGYQTNDEAYYESATLGQLLPFVIASIIDGTVLEQAQEMINDGQPKGSSSPAEGGNLLANLIDIKKGFLQLEQDDQALLRMRHHEGFTLQQIAQVLECAISTADRRCDKSLRRLQDNLGGISPWQ*
JGI25907J50239_10073062	F003784	GGA	MYDDDKSRVGHDATDFAAYGLSDLASTIRKSDHLDKAPASAPLADHPAVTGYRAVGVTTEDLTSFIESFASLRANRVKGVGHSQYAIAQGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDQVLPDCE*
JGI25907J50239_10073065	F009331	GAGG	MMCDNCLKAGEENGLAHYKRSAHWHDKCDYKGCVCQHKTGPGYVRRDGSKEPLMRTQSP*
JGI25907J50239_10073067	F003456	N/A	KWLRKAGVIAERLTKAGAKDEGDIVTVIAGETYILELKNRATLSLPEFWREAQVEALNYSKARGLGEVPLSYVIVKRRNASIDQAWVIQDLAQWLKEKQ*