Scaffold JGI25907J50239_1006777

Overview

Basic Information

• Taxon OID: 3300003394
• Scaffold ID: JGI25907J50239_1006777
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2738
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015867	Metagenome / Metatranscriptome	251	N
F018713	Metagenome	233	N
F024743	Metagenome / Metatranscriptome	204	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25907J50239_10067773	F024743	AGG	MNEVQLYNLYSQDSSAYNEGKKAQNLIIIMNVLHLRLEHNMPLHKIAKRCGIKINKVKLIIFNYDSRS*
JGI25907J50239_10067774	F018713	N/A	MTPDPNLWAEIPQEVKDAAILLGNYFKKKGLDSWTLYDVSSRQNFNGAYNQGLDTAISLVSEGSDMETIICGLENSKKQFSNECGDGIDYTKSF*
JGI25907J50239_10067775	F015867	GAG	MKYKVTYYDYDSDSYLTKDLYWMASYRGSFDFVPVSDGPKENWKGFSISGSGVNVFYNDKGMNITVDGFQEMKSGGYGKTTTVIQSVI*