Scaffold JGI25907J50239_1002677

Overview

Basic Information

• Taxon OID: 3300003394
• Scaffold ID: JGI25907J50239_1002677
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4334
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070119	Metagenome	123	N
F072347	Metagenome	121	Y
F082675	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25907J50239_100267711	F070119	GGAGG	MNLNNYAAYDFMLPNFLEPGDIIQWEEEIYTVKKCDLLSDGFIIYAVDEMEDNVELLIPDNTVISLMEEQ*
JGI25907J50239_100267714	F072347	AGGA	MDNRTKAEILVQFTQDEFNSGEYDEFFDYNDLGIPLSIAITQDMVILTDSGEQLLDETWKELCLLFEANPDDE
JGI25907J50239_10026778	F082675	AGGAG	MSKQYHWVVVYDEDWKCFMVDADLGFFHRDKMLYNKESGKWEYLEEDSEQEAEYYRLEEMLAYQMTRLDLSEKV*