Scaffold JGI25907J50239_1001999

Overview

Basic Information

• Taxon OID: 3300003394
• Scaffold ID: JGI25907J50239_1001999
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4967
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032950	Metagenome	178	Y
F035217	Metagenome	172	Y
F089862	Metagenome	108	N
F095169	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25907J50239_10019993	F089862	GGTGG	MSIAXEITELXNRIAPAKEIXGGFMSRNEIXELIDKVANTAVAIGWTHGESMTRKRLEKKIEVMEQEMVIIKEQMKALELDLLVAESK*
JGI25907J50239_10019994	F032950	N/A	MNTLIKFIIAAACAXSLMYFDSLDNKPKEKTNVGNNRMGNSDRXFRVRIGNLRLHRICVVPTKQGTRRVKCPVCEWTRTLDNRYVCKKIERVIIATQIKKRKNYGMERTNHQVR*
JGI25907J50239_10019995	F095169	AGGA	MGWRELTTKYVRDLLRAKTPLEVAEKELIXARHSKMQGETAVEYAQSIVAYNDKRIFRLTDXIAELKGEYYDR*
JGI25907J50239_10019996	F035217	AGG	MTDXDEAFXXXEKQSMWRKRAVQAAISKNPYRDQVIEEVAKEVEKLTGFGKDTIDGLTIYIRNMKT*