Scaffold JGI25909J50240_1012729

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1012729
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2019
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007749	Metagenome / Metatranscriptome	345	Y
F014617	Metagenome / Metatranscriptome	261	Y
F026267	Metagenome	198	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_10127292	F026267	AGCAGG	MKVKLELDLQDGRGTRTMITNMFVVCEWEKLENRKVSDGKGIGYSDIACWAYHLCKLAGDTVPDTWREWVKQHPNMELTSVDETNPNPTALALTEDN*
JGI25909J50240_10127294	F014617	AGG	MIYTIASIRLGIIGDPYVPADGINVAALLSGGFIVEQSTPKPKKPAKTSTEPNEEI*
JGI25909J50240_10127296	F007749	N/A	GNDFCYRRRQESGYFDSLTTSPGHDATLGTLMYCAALWRSRGSIETAYAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA*