Scaffold JGI25909J50240_1011638

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1011638
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2118
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018714	Metagenome	233	Y
F047054	Metagenome / Metatranscriptome	150	N
F051884	Metagenome	143	N
F101131	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_10116382	F051884	GAG	MIDPKDDAPWLDCMDGFDEEQIKKVLKAQRQAQKLLDAAHRVADGEVPLGKLIRLGHKDPMSVRVRYEYGAILLALVEECAYMKDGLTLVMFGIYWILLRS*
JGI25909J50240_10116384	F101131	GGA	MKKLCIDCKYYKKYYGYGGSNGIYDECLCPLVIKEKDFVRGVIHRSFCMYERLSHSGCGPDAKYFEQYEPPVPDKPWWTKNLEKLKNLLG*
JGI25909J50240_10116385	F018714	GAGG	MTDTEYYKTLVIGGIIAASFTILAFYMLKPQNHTDTPKTNFAVVDTYKDCKVIQWNNGMQAEFKYFLDCSK*
JGI25909J50240_10116388	F047054	GGA	MDNTHSQDLIDDNLKYTLRPRIKDRTKVISAALQYVLNNDLVNKSYLEKIVQELEEMNE*