Scaffold JGI25909J50240_1006522

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1006522
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2921
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F006743	Metagenome / Metatranscriptome	365	Y
F051794	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_10065222	F006743	GGAGG	VRTENWQSNTRGLRLVGEGESGSASTFFGPVRAGLTTSQATSKEAQLSELLSSLEREVENLRSKYCEAYVTLICVTEHLVRLNALLLNINTTRLKDS*
JGI25909J50240_10065223	F051794	GGAGG	MKTIDKRRAYSEKRAVWLRNYQRARARALTRLAQQYPDQYKDLLEQERLADESMAKTWLDITGATSISSSLGVLTDRNNDTS*
JGI25909J50240_10065226	F002827	AGGAGG	VNKEYYQAKADLCRDLAIKQMVEGEAGEAGKNLIRMVNALNQINLINYKEEKDNDNQSNPRV*