Scaffold JGI25909J50240_1006177

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1006177
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3005
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041091	Metagenome	160	N
F054004	Metagenome	140	N
F097250	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_10061774	F097250	AGGAG	MSITVRSALNLVTQQINVAMTRFLSYFQIWTPTLSLSERTKLRQKAARKLKEKPKTQRMVMPSKLITDPTFGYVNSALTDVSETWKKHSTGVKNAGLFNNPNADRKNNKESGGEVPTQKIRRVQ*
JGI25909J50240_10061778	F041091	N/A	MPPFAKSEESMSEWKTQQQVYDELRNDILEQVALDIEKMTGFGKDTISSFAIYIRNMKCLDQNQS*
JGI25909J50240_10061779	F054004	N/A	MTFSELFGRVALIVALLVGVNHVLTQPVTPQSIQVASKKKSLLKACIRLHKKKAKNYATVCEKRGIYV*