NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25909J50240_1004031

Scaffold JGI25909J50240_1004031


Overview

Basic Information
Taxon OID3300003393 Open in IMG/M
Scaffold IDJGI25909J50240_1004031 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3752
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F007523Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
JGI25909J50240_10040316F000468AGTAGGMTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYLQITFVALTGQTLPFDINDSLSLQVKDTSAAYVNIFGGDITDITVSVGATGSNATVIQYSVLAMGSLVKLAKELYAGTISQDEDGDQIYALLSSVLLGSWNDVPAATTWSGYDATETWADALNLGLGEIDQPGLYTMENRAADADTIFNIAQLIANSAFGYLYEDNEGNIGYADADHRQTYLLANGYVDLDARHALGQGLSTITRSGDIRNDVYINYGNNFGSQETATSASSIATYGYKAENIQSVLHSAVDAQAVADRYIAQRAFPQPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNLQNLPAQISTGEFEGYVEGWSWSTRFNELFLTINLSPVAFSQFSMRWNTVPIGEAWNTLSATLTWEYATIVS*
JGI25909J50240_10040317F007523N/AKGKGIELETVANALGRAQDGNTTALGRLGLGLSKAELSTLSXTEVQAKLSELYGGAAAANAETFQGKIDRLKVGFDEAKESLGTALLPQVEKFITFLNDTAVPALNAFIAGFTGDAGLNAALSETQQGAASFGRTIATISGIISGFITFLREAIGLVVSLANEFIKIVNIIPGVNVGALPNPAPSAGRSSLPTVPRGGSNFTYGSGNPVNITVNAIDGEGAARAVAGVLNQSAARSQGLLVGGTVGK*
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