Scaffold JGI25909J50240_1000990

Overview

Basic Information

• Taxon OID: 3300003393
• Scaffold ID: JGI25909J50240_1000990
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7188
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012113	Metagenome / Metatranscriptome	283	Y
F019102	Metagenome	231	Y
F023059	Metagenome	211	Y
F041645	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25909J50240_10009901	F023059	AGAAG	MFEAAIASLAGVVGIVFWWLKNRAKTRRERDDDEIAYNRKLRDSEVDSWIHRR*
JGI25909J50240_100099011	F019102	N/A	CSSGLGESRNLLGTTQESRSGAGDTKGRANSTHLRKRNLGAKKGNPKASMSISLDEELNSAFISPDKEYMGEKLAPYTEGSRLLLLQVRDDSDSSIYFIWSFIYMHIQIAKGRKEAIKLAWNRDLFREKIMDFIEGKTEADRDAATEIVSNILDEAQKGKVEAIPAPHQAELGNA*
JGI25909J50240_10009902	F012113	N/A	MNQILTFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLTKIVSFLSKFSKK*
JGI25909J50240_10009907	F041645	GGTGG	MASVIIGSAIGATSTSKALQRQNFNKEPNGLETIIEAYAIQTANRDAVVPEKNTLHSAFSSSTKKYSRMVVESVATEEQDGGITQMLVTYVGLTILTGLPPAIVRIIPAAGEGVYGPPVVIEAEYVTDVSETQFMAGQRAQNNATQFTFGFNSVIKMPPFINGTALPQDPRPAFFSSPSGGVGFIENYSGYCVLSKSCERRGLFLVARDTFHEVQQVATVGAR*