Scaffold JGI25910J50241_10012213

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10012213
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3077
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F010913	Metagenome / Metatranscriptome	297	N
F014847	Metagenome / Metatranscriptome	259	Y
F028145	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_100122131	F010913	N/A	DNNACYDRILLKAVLDSNKNQIERYNNIMSALTNLQEALNRLTTATDTAVTVLNTPHPSEEAIQAAADLVNAQATRLESASDSDPATIA*
JGI25910J50241_1001221310	F000962	GGA	MNIHVPDEIKAKYPHMEFRGKQRQLNDXTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNTK*
JGI25910J50241_100122138	F014847	AGG	MEYESNADILNDLMDQIHTLHKENAKLRQEVEQLNDLIKELNRKLKSIQALFL*
JGI25910J50241_100122139	F028145	N/A	MKLFCIFIVNLALSFFASILLYQLFKIDISPVTISLATIVIYICLPQRFHDWISEK*