Scaffold JGI25910J50241_10011577

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10011577
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3164
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F022886	Metagenome / Metatranscriptome	212	N
F053288	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_100115772	F006547	GGA	MKWIFIFLFPVLVSAQIYDTTYQMVYYQKSLIKKGKVELYGYTSYDLWWADESGIGLLYTLPNKRKKKTKRK*
JGI25910J50241_100115774	F053288	N/A	MITIKNYNSDVNLGVFYGWDMKYAMEDKDFYSFEFEHRKEQKRVYVLVHRNKLKSKKRAKHLPINGDLHEVYIQDMVSDKWRRTVNLAKTSLNKSAFYNLIESVIDDEYGLPF*
JGI25910J50241_100115775	F022886	GGA	MITIKNWDKLTRMFRSQIDIGELELCYEITYYYPTLPSNEYYKITLSRISPPQQDHPHKGEYLMLCGVSEYWLNKKELEDVDSVYEAIVDVVVRHNLKVRV*