Scaffold JGI25910J50241_10011266

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10011266
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3208
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016365	Metagenome / Metatranscriptome	247	Y
F049582	Metagenome / Metatranscriptome	146	Y
F068762	Metagenome / Metatranscriptome	124	N
F082595	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_100112662	F082595	AGGAGG	MSIPMKTFRFMVLIDNKSPGVIVEQRAMNVTQATQAVQAQYGSNCRVTFYGMVNE*
JGI25910J50241_100112664	F068762	GAGG	MLRQQDLYHLYAGIRERLHEIMINERHPDPMQGQVRREMAEELLEYLQGTEQGLKTMTDYKEQWTRGENE*
JGI25910J50241_100112665	F016365	AGGA	MNATQKLILATAAVIYGMTAPLPANETIKETQDALNKWYETVSTSVSQDVTALGVTVVNMPEKISLGVSNFWEETKQFQKDSWNETLKFEQEKQNWENYQRLVYTCNRRG*
JGI25910J50241_100112668	F049582	AGGAG	MAKKDIYQVLEQRYSSESDLTVSMMKRAISELHIVNPKSLDLIYESVIFYTGDWPESEGWGTSDSRICMNSVKETLLACEYLMGVAR*