Scaffold JGI25910J50241_10006960

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10006960
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4122
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F007689	Metagenome / Metatranscriptome	346	Y
F073536	Metagenome / Metatranscriptome	120	Y
F095384	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_1000696012	F073536	N/A	MTWVQYEVWGVEADGHEQLIDTTNSLKEARNLAEESLTEDIVECIIYREEDGELYEEEVVVRE*
JGI25910J50241_100069603	F000354	AGGAG	MTKVNYDRFASFDINECCDHFDSEKQSNWKKIGKFIVADGQEYAHIMETEFDFEDTGAGEYEAFQAGVKYALTKMNIAFEAAAVDLQVCEVDLVESMGFVLVRADDEPEDFVKRVLKKPVMMVDSWC*
JGI25910J50241_100069604	F007689	AGGAG	MKLFEATVRRPDGSEFKDRVGANDAQEARRLLQERHGPRAIPYVPHMIPS*
JGI25910J50241_100069607	F095384	AGGAG	MFHTDNQVEFKEILRKFSDATYENXGXHAYAAGYLESMAVQMLALMSKREQKGFIDSMAAVVKKQREXA*