Scaffold JGI25910J50241_10004113

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10004113
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5284
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006698	Metagenome / Metatranscriptome	366	Y
F088343	Metagenome / Metatranscriptome	109	Y
F105150	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_1000411310	F006698	AGGA	MTRYYDTIAEFERDGFDIIVDKSYEDLDPKDCFDDECFNLKEMYSDIECGKLDWFMLRVRVMVENIELSSEFLGGCLYSDAKEVLTDGTAEDLIDMALTEAKRDVYRLYKKFQDLSWQLDAGHVT*
JGI25910J50241_1000411312	F105150	GGA	MYRFVCQMFYKDKLYAGHYWGDEYSQARACKAMAELQRYRPGMRFVLTDYKTGAIIKTTEYEPKQYHIKERTYA*
JGI25910J50241_100041139	F088343	AGGA	MYNFSTLTQAQKDAMQALVNKYKDVEGDYESTMLGGIVHAYCDSGILTDAYSVQDAELVAKYFTQEAMDSGYMDLFNDFIVTVSDGTEELLCCKVVEEMCAIIDDVELASAYVGKLTDTLMEHCYTD*